Single-cell view of deep-sea microbial activity and intracommunity heterogeneity
Arandia-Gorostidi, Nestor, Alma Parada, Anne E. Dekas. 2023. “Single-cell view of deep-sea microbial activity and intracommunity heterogeneity.” The ISME Journal. 10.1038/s41396-022-01324-6
An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea
Buessecker, Steffen, Marike Palmer, Dengxun Lai, Joshua Dimapilis, Xavier Mayali, et al. 2023. “An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea.” Nature Communications. 10.1038/s41467-022-31452-8
Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota Parada, Alma E., Xavier Mayali, Peter Weber, Jessica Wollard, Alyson Santoro, et al. 2023. “Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota.” Environmental Microbiology. 10.1111/1462-2920.16299
Contributions of anoxic microsites to soil carbon protection across soil textures
Lacroix, Emily M., Janica Mendillo, Anna Gomes, Anne Dekas, and Scott Fendorf. 2022. “Contributions of anoxic microsites to soil carbon protection across soil textures.” Geoderma. 10.1016/j.geoderma.2022.116050
Rates and physicochemical drivers of microbial anabolic activity in deep‐sea sediments and implications for deep time
Meyer, Nicolette, Alma E. Parada, Bennett J. Kapili, Julian L. Fortney, and Anne E. Dekas. 2022. “Rates and physicochemical drivers of microbial anabolic activity in deep‐sea sediments and implications for deep time.” Environmental Microbiology. 10.1111/1462-2920.16183
Cold Seeps on the Passive Northern US Atlantic Margin Host Globally Representative Members of the Seep Microbiome with Locally Dominant Strains of Archaea
Semler, Amanda C., Julian L. Fortney, Robinson W. Fulweiler, Anne E. Dekas. 2022.“Cold Seeps on the Passive Northern US Atlantic Margin Host Globally Representative Members of the Seep Microbiome with Locally Dominant Strains of Archaea.” Applied and Environmental Microbiology. 10.1128/aem.00468-22
Comparison of Microbial Profiling and Tracer Testing for the Characterization of Injector-Producer Interwell Connectivities
Zhang, Yuran, Anne E. Dekas, Adam J. Hawkins, John Carlo Primo, Oxana Gorbatenko, et al. 2022. “Comparison of Microbial Profiling and Tracer Testing for the Characterization of Injector-Producer Interwell Connectivities.” Water. 10.3390/w14182921
Geological activity shapes the microbiome in deep-subsurface aquifers by advection
Zhang, Yuran, Roland N Horne, Adam J Hawkins, John Carlo Primo, Oxana Gorbatenko, et. al. 2022. “Geological activity shapes the microbiome in deep-subsurface aquifers by advection.” Proceedings of the National Academy of Sciences. 10.1073/pnas.2113985119
Scientific American feature
Quantifying Microbial Activity In Situ: the Link between Cells and Cycles
Dekas, Anne E. 2021. “Quantifying Microbial Activity In Situ: the Link between Cells and Cycles.” mSystems. 10.1128/mSystems.00758-21
PPIT: an R package for inferring microbial taxonomy from nifH sequences
Kapili, Bennett J. and Anne E. Dekas. 2021. “PPIT: an R package for inferring microbial taxonomy from nifH sequences.” Bioinformatics. 10.1093/bioinformatics/btab100
Characterizing the “fungal shunt”: Parasitic fungi on diatoms affect carbon flow and bacterial communities in aquatic microbial food webs
Klawonn, Isabell, Silke Van den Wyngaert, Alma E. Parada, Nestor Arandia-Gorostidi, Martin J. Whitehouse, et al. 2021. “Characterizing the “fungal shunt”: Parasitic fungi on diatoms affect carbon flow and bacterial communities in aquatic microbial food webs.” Proceedings of the National Academy of Sciences. 10.1073/pnas.2102225118
Discover Magazine feature
Microbial diversity and activity in Southern California salterns and bitterns: analogues for remnant ocean worlds
Klempay, Benjamin, Nestor Arandia-Gorostidi, Anne E. Dekas, Douglas H. Bartlett, Christopher E. Carr, et al. 2021. “Microbial diversity and activity in Southern California salterns and bitterns: analogues for remnant ocean worlds.” Environmental Microbiology. 10.1111/1462-2920.15440
NanoSIMS sample preparation decreases isotope enrichment: magnitude, variability and implications for single-cell rates of microbial activity
Meyer, Nicolette R., Julian L. Fortney, and Anne E. Dekas. 2021. “NanoSIMS sample preparation decreases isotope enrichment: magnitude, variability and implications for single-cell rates of microbial activity.” Environmental Microbiology. 10.1111/1462-2920.15264
DNA Tracer Transport Through Porous Media—The Effect of DNA Length and Adsorption
Zhang, Yuran., Marshall B. Hartung, Adam J. Hawkins, Anne E. Dekas, Kewen Li, et al. 2021. “DNA Tracer Transport Through Porous Media—The Effect of DNA Length and Adsorption.” Water Resources Research. 10.1029/2020WR028382
Evidence for Phylogenetically and Catabolically Diverse Active Diazotrophs in Deep-Sea Sediment
Kapili, Bennett J., Samuel E. Barnett, Daniel H. Buckley, and Anne E. Dekas. 2020. “Evidence for Phylogenetically and Catabolically Diverse Active Diazotrophs in Deep-Sea Sediment.” The ISME Journal. 10.1038/s41396-019-0584-8
Microbial Community Composition in Deep‐Subsurface Reservoir Fluids Reveals Natural Interwell Connectivity
Zhang, Yuran, Anne E. Dekas, Adam J. Hawkins, Alma E. Parada, Oxana Gorbatenko, et al. 2020. “Microbial Community Composition in Deep‐Subsurface Reservoir Fluids Reveals Natural Interwell Connectivity.” Water Resources Research. 10.1029/2019WR025916
Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-Isotope NanoSIP
Dekas, Anne E., Alma E. Parada, Xavier Mayali, Jed A. Fuhrman, Jessica Wollard, et al. 2019. “Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-Isotope NanoSIP.” Frontiers in Microbiology. 10.3389/fmicb.2019.02682
High-quality genome sequences of uncultured microbes by assembly of read clouds
Bishara, Alex, Eli L. Moss, Mikhail Kolmogorov, Alma E. Parada, Ziming Weng, et al. 2018. “High-quality genome sequences of uncultured microbes by assembly of read clouds.” Nature Biotechnology. 10.1038/nbt.4266
Widespread nitrogen fixation in sediments from diverse deep-sea sites of elevated carbon loading
Dekas, Anne E., David A. Fike, Grayson L. Chadwick, Abigail Green-Saxena, Julian Fortney, et al. 2018. “Widespread nitrogen fixation in sediments from diverse deep-sea sites of elevated carbon loading.” Environmental Microbiology. 10.1111/1462-2920.14342
Characterization of benthic biogeochemistry and ecology at three methane seep sites on the Northern U.S. Atlantic margin
McVeigh, Doreen, Adam Skarke, Anne Dekas, Chiara Borrelli, W.-L. Hong, et al. 2018. “Characterization of benthic biogeochemistry and ecology at three methane seep sites on the Northern U.S. Atlantic margin.” Deep Sea Research Part II: Topical Studies in Oceanography. 10.1016/j.dsr2.2018.03.001
Early-career scientists explore newly discovered methane seeps
Dekas, Anne E. and Adam Skarke. 2017. “Early-career scientists explore newly discovered methane seeps.” Eos. 10.1029/2017EO068011
Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses
Dekas, Anne E., Stephanie A. Connon, Grayson L. Chadwick, Elizabeth Trembath-Reichert, and Victoria J. Orphan. 2016. “Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses.” The ISME Journal. 10.1038/ismej.2015.145
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
Eloe-Fadrosh, Emiley A., David Paez-Espino, Jessica Jarett, Peter F. Dunfield, Brian P. Hedlund, et al. 2016. “Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.” Nature Communications. 10.1038/ncomms10476
Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea
Dekas, Anne E., Grayson L. Chadwick, Marshall W. Bowles, Samantha B. Joye, and Victoria J. Orphan. 2014. “Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea.” Environmental Microbiology. 10.1111/1462-2920.12247
Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane
Green-Saxena, A., A. E. Dekas, N. F. Dalleska, and V. J. Orphan. 2014. “Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane.” The ISME Journal. 10.1038/ismej.2013.147
Polyphosphate Storage during Sporulation in the Gram-Negative Bacterium Acetonema longum
Tocheva, Elitza I., Anne E. Dekas, Shawn E. McGlynn, Dylan Morris, Victoria J. Orphan, et al. 2013. “Polyphosphate Storage during Sporulation in the Gram-Negative Bacterium Acetonema Longum.” Journal of Bacteriology. 10.1128/JB.00712-13
Identification of Diazotrophic Microorganisms in Marine Sediment via Fluorescence in situ Hybridization Coupled to Nanoscale Secondary Ion Mass Spectrometry (FISH-NanoSIMS)
Dekas, Anne E., and Victoria J. Orphan. 2011. “Chapter 12 – Identification of Diazotrophic Microorganisms in Marine Sediment via Fluorescence in situ Hybridization Coupled to Nanoscale Secondary Ion Mass Spectrometry (FISH-NanoSIMS).” Methods in Enzymology: Research on Nitrification and Related Processes, Part A. 10.1016/B978-0-12-381294-0.00012-2
Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia
Dekas, Anne E., Rachel S. Poretsky, and Victoria J. Orphan. 2009. “Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia.” Science. 10.1126/science.1178223
Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility
Newcombe, David, Anne Dekas, Shanmugam Mayilraj, and Kasthuri Venkateswaran. 2009. “Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility.” International Journal of Systematic and Evolutionary Microbiology. 10.1099/ijs.0.009167-0
Microbial burden and diversity of commercial airline cabin air during short and long durations of travel
Osman, Shariff, Myron T. La Duc, Anne Dekas, David Newcombe, and Kasthuri Venkateswaran. 2008. “Microbial burden and diversity of commercial airline cabin air during short and long durations of travel.” The ISME Journal. 10.1038/ismej.2008.11
Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
Pernthaler, Annelie, Anne E. Dekas, C. Titus Brown, Shana K. Goffredi, Tsegereda Embaye, et al. 2008. “Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics.” Proceedings of the National Academy of Sciences. 10.1073/pnas.0711303105
Isolation and characterization of bacteria capable of tolerating the extreme conditions of clean room environments
La Duc, Myron T., Anne Dekas, Shariff Osman, Christine Moissl, David Newcombe, et al. 2007. “Isolation and characterization of bacteria capable of tolerating the extreme conditions of clean room environments.” Applied and Environmental Microbiology. 10.1128/AEM.03007-06
Molecular bacterial community analysis of clean rooms where spacecraft are assembled
Moissl, Christine, Shariff Osman, Myron T. La Duc, Anne Dekas, Eoin Brodie, et al. 2007. “Molecular bacterial community analysis of clean rooms where spacecraft are assembled.” FEMS Microbiology Ecology. 10.1111/j.1574-6941.2007.00360.x
High-Mass Triple Systems: The Classical Cepheid Y Carinae
Evans, N. R., K. G. Carpenter, R. Robinson, F. Kienzle, and A. E. Dekas. 2005. “High-Mass Triple Systems: The Classical Cepheid Y Carinae.” Astronomical Journal. 10.1086/430458
